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0SCYBG_HUMAN*   SwissProt (?) | Description Local Annotation Link Reference
General Information
NameCXCL16
DescriptionSmall inducible cytokine b16 precursor (transmembrane chemokine cxcl16) (sr-psox) (scavenger receptor for phosphatidylserine and oxidized low density lipoprotein).
SpeciesHomo sapiens (NCBI taxonomy ID: 9606)
GO0005576 extracellular region (NAS)
0016021 integral to membrane (NAS)
0016020 membrane (TAS)
0005102 receptor binding (NAS)
0005044 scavenger receptor activity (TAS)
0006935 chemotaxis (NAS)
0048247 lymphocyte chemotaxis (NAS)
0006898 receptor mediated endocytosis (NAS)

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schematic display of those terms with internal associations, click the node and browse the corresponding GO term
Domain ArchitectureN/A
SequencesProtein: SCYBG_HUMAN (254 aa)
mRNA: BC044930 NM_022059
Local Annotation
Synapse Ontology
Calcium release from RyR (Ryanodine Receptor) in the SR (Sarcoplasmic Reticulum) is activated by the calcium induced-calcium-release
sdb:0325 RyR-CICR  (Evidence:keywords)
KO assignmentK05407
  Level 3 annotation:
    chemokine (C-X-C motif) ligand, other
  Level 2 annotation:
    Cytokines
    Cytokine-cytokine receptor interaction
    Toll-like receptor signaling pathway
    Leukocyte transendothelial migration
Loci Structure (Details)Loci index, Chromosomal location, Length, Possible relational loci clusterExon1: 316 residues, 4583578-4584523Exon2: 25 residues, 4584626-4584696Exon3: 141 residues, 4585135-4585552Exon4: 29 residues, 4588451-4588534Exon5: 48 residues, 4588825-4588964Exon6: 123 residues, 4589304-4589667Exon7: 2 residues, -Jump to SCYBG_HUMANExon1: 315 residues, 4583580-4584523Exon2: 25 residues, 4584626-4584696Exon3: 141 residues, 4585135-4585552Exon4: 29 residues, 4588451-4588534Exon5: 48 residues, 4588825-4588964Exon6: 188 residues, 4589304-4589863Exon7: 2 residues, -Jump to SCYBG_HUMAN  
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Loci Cluster (Details)Loci: 2970 4657391-4673694 ~-16K 14928(PLD2)(+)Loci: 4256 4741839-4747148 ~-5K 14931(CHRNE)(-)Loci: 4257 4781348-4784063 ~-3K 14933(SLC25A11)(-)Loci: 2971 4841999-4868720 ~-27K 14947(KIF1C)(+)Loci: 2972 5126316-5227430 ~-101K 14961(RABEP1)(+)Loci: 4255 4583578-4589863 ~-6K 14918(CXCL16)(-)Link out to UCSC