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0RENT1_HUMAN*   SwissProt (?) | Description Local Annotation Link Reference
General Information
NameRENT1
DescriptionRegulator of nonsense transcripts 1 (nonsense mrna reducing factor 1) (norf1) (up-frameshift suppressor 1 homolog) (hupf1).
SpeciesHomo sapiens (NCBI taxonomy ID: 9606)
GO0005737 cytoplasm (NAS)
0004386 helicase activity (NAS)
0005515 protein binding (IPI)
0003723 RNA binding (NAS)
0000184 mRNA catabolism, nonsense-mediated decay (NAS)
0006449 regulation of translational termination (IMP)
0006396 RNA processing (TAS)

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schematic display of those terms with internal associations, click the node and browse the corresponding GO term
Domain Architecture (Details)
InterPro domains unassigned to SynO:
This family includes the res subunit of type III restriction enzymes () .
  IPR006935:Type III restriction enzyme, res subunit
IPR006935:ResIII 
Evalue:-6.95860719680786 
Location:479-545
SequencesProtein: RENT1_HUMAN (1129 aa)
mRNA: D86988 NM_002911
Local Annotation
Synapse Ontology
Calcium release from RyR (Ryanodine Receptor) in the SR (Sarcoplasmic Reticulum) is activated by the calcium induced-calcium-release
sdb:0325 RyR-CICR  (Evidence:keywords)
KO assignmentNot mapped to KEGG
Loci Structure (Details)Loci index, Chromosomal location, Length, Possible relational loci clusterExon1: 155 residues, 18803787-18804249Exon2: 48 residues, 18817788-18817928Exon3: 32 residues, 18819552-18819642Exon4: 58 residues, 18821883-18822051Exon5: 62 residues, 18822496-18822677Exon6: 56 residues, 18823943-18824105Exon7: 30 residues, 18824795-18824880Exon8: 35 residues, 18825060-18825159Exon9: 38 residues, 18826409-18826518Exon10: 55 residues, 18826687-18826847Exon11: 41 residues, 18826932-18827051Exon12: 57 residues, 18827733-18827898Exon13: 40 residues, 18827994-18828109Exon14: 50 residues, 18828685-18828829Exon15: 73 residues, 18829128-18829342Exon16: 41 residues, 18832129-18832247Exon17: 54 residues, 18832634-18832791Exon18: 49 residues, 18833818-18833961Exon19: 60 residues, 18835246-18835421Exon20: 29 residues, 18835978-18836060Exon21: 56 residues, 18837097-18837259Exon22: 74 residues, 18837369-18837587Exon23: 43 residues, 18837852-18837975Exon24: 571 residues, 18838329-18840038Exon25: 2 residues, -Jump to RENT1_HUMANExon1: 147 residues, 18803809-18804249Exon2: 48 residues, 18817788-18817928Exon3: 32 residues, 18819552-18819642Exon4: 58 residues, 18821883-18822051Exon5: 62 residues, 18822496-18822677Exon6: 56 residues, 18823943-18824105Exon7: 41 residues, 18824795-18824913Exon8: 35 residues, 18825060-18825159Exon9: 38 residues, 18826409-18826518Exon10: 55 residues, 18826687-18826847Exon11: 41 residues, 18826932-18827051Exon12: 57 residues, 18827733-18827898Exon13: 40 residues, 18827994-18828109Exon14: 50 residues, 18828685-18828829Exon15: 73 residues, 18829128-18829342Exon16: 41 residues, 18832129-18832247Exon17: 54 residues, 18832634-18832791Exon18: 49 residues, 18833818-18833961Exon19: 60 residues, 18835246-18835421Exon20: 29 residues, 18835978-18836060Exon21: 56 residues, 18837097-18837259Exon22: 74 residues, 18837369-18837587Exon23: 43 residues, 18837852-18837975Exon24: 571 residues, 18838329-18840038Exon25: 2 residues, -Jump to RENT1_HUMAN  
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Loci Cluster (Details)Loci: 4381 18754582-18763114 ~-9K 18371(COMP)(-)Loci: 3100 18803787-18840038 ~-36K 18373(RENT1)(+)Loci: 4382 18871323-18891199 ~-20K 18381(COPE)(-)Loci: 4383 18901011-18912983 ~-12K 18385(HOMER3)(-)Loci: 3101 19035807-19084697 ~-49K 18393(+)Loci: 3099 18655487-18749762 ~-94K 18368(MECT1)(+)Link out to UCSC