SynDB Home Page
SynDB Home Page

blue bulletSynDB protein details  

Parse error: syntax error, unexpected T_VARIABLE in /home/kongl/syndb/www/sdb_nats.php on line 52
0PAXI_HUMAN*   SwissProt (?) | Description Local Annotation Link Reference
General Information
SpeciesHomo sapiens (NCBI taxonomy ID: 9606)
GO0005875 microtubule associated complex (TAS)
0005515 protein binding (IPI)
0007155 cell adhesion (NAS)
0007172 signal complex formation (TAS)
0007165 signal transduction (TAS)

Warning: fopen(/home/kongl/syndb/www/temp/ [function.fopen]: failed to open stream: Permission denied in /home/kongl/syndb/www/sdb_pro.php on line 269

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 270

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 271

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 272

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 273

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 274

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 299

Warning: fclose(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 300
schematic display of those terms with internal associations, click the node and browse the corresponding GO term
Domain Architecture (Details)
InterPro domains unassigned to SynO:
Paxillin is a cytoskeletal protein involved in actin-membrane attachment at sites of cell adhesion to the extracellular matrix (focal adhesion) . Extensive tyrosine phosphorylation occurs during integrin-mediated cell adhesion.mbryonic development.ibroblast transformation and following stimulation of cells by mitogens that operate through the 7TM family of G-protein-coupled receptors . Paxillin binds in vitro to the focal adhesion protein vinculin.s well as to the SH3 domain of c-Src.nd.hen tyrosine phosphorylated.o the SH2 domain of v-Crk . An N-terminal region has been identified that supports the binding of both vinculin and the focal adhesion tyrosine kinase.p125Fak .Paxillin is a 68 kDa protein containing multiple domains.ncluding four tandem C-terminal LIM domains (each of which binds 2 zinc ions); an N-terminal proline-rich domain.hich contains a consensus SH3 binding site; and three potential Crk-SH2 binding sites . The predicted structure of paxillin suggests that it is a unique cytoskeletal protein capable of interaction with a variety of intracellular signalling and structural molecules important in growth control and the regulation of cytoskeletal organisation .
Recently . number of proteins have been found to contain a conserved cysteine-rich domain of about 60 amino-acid residues. These proteins are:Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode.C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells.Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene.Vertebrate homeobox proteins (lim-5) and lim3.Vertebrate lmx-1.hich acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene.Mammalian LH-2. transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types.Drosophila melanogaster protein apterous.equired for the normal development of the wing and halter imaginal discs.Vertebrate protein kinases LIMK-1 and LIMK-2.Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia.Mammalian and avian cysteine-rich protein (CRP). 192 amino-acid protein of unknown function. Seems to interact with zyxin.Mammalian cysteine-rich intestinal protein (CRIP). small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein.Vertebrate paxillin. cytoskeletal focal adhesion protein.Mouse testin which should not be confused with rat testin which is a thiol protease homolog (see ).Sunflower pollen specific protein SF3.Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP.Yeast protein LRG1 which is involved in sporulation .Yeast rho-type GTPase activating protein RGA1/DBM1.C. elegans homeobox protein ceh-14.C. elegans homeobox protein unc-97.Yeast hypothetical protein YKR090w.C. elegans hypothetical proteins C28H8.6.These proteins generally have two tandem copies of a domain.alled LIM (for Lin-11 Isl-1 Mec-3) in their N-terminal section. Zyxin and paxillin are exceptions in that they contains respectively three and four LIM domains at their C-terminal extremity. In to and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains.In the LIM are seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is C-x(2)-C-x(16.3)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16.1)-C-x(2.)-[CHD]. The LIM domain binds two zinc ions . LIM does not bind DNA.ather it seems to act as an interface for protein-protein interaction.
  IPR001781:LIM, zinc-binding
SequencesProtein: PAXI_HUMAN (591 aa)
mRNA: NM_002859
Local Annotation
Synapse Ontology
Any process that modulates the physical form of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell).
sdb:0033 regulation of synapse structure  (Evidence:keywords)
microtubules of the presynaptic compartment function as the tracks for the intense traffic of organelles from cell body to axon terminals and vice versa. It is generally excluded from the presynaptic vesicle cluster.Microtubules do not directly regulate synapse morphology or function
sdb:0087 microtubules  (Evidence:keywords)
the specialized cytoskeletal scaffold that is anchored to the presynaptic membrane, and it varies in morphology.
sdb:0103 specialized cytoskeletal scaffold  (Evidence:keywords)
cytoskeleton filaments is one kind of structural components to maintain synapse morphology and bear the related function which is connected with the synaptic morphology.
sdb:0280 cytoskeletal filaments  (Evidence:keywords)
KO assignmentK05760
  Level 3 annotation:
  Level 2 annotation:
    Regulation of actin cytoskeleton
    Focal adhesion
    Leukocyte transendothelial migration
Loci Structure (Details)Loci index, Chromosomal location, Length, Possible relational loci clusterExon1: 710 residues, 119132639-119134766Exon2: 51 residues, 119136027-119136176Exon3: 29 residues, 119136321-119136403Exon4: 60 residues, 119137010-119137184Exon5: 59 residues, 119137288-119137459Exon6: 47 residues, 119143808-119143944Exon7: 69 residues, 119144734-119144936Exon8: 47 residues, 119145048-119145185Exon9: 40 residues, 119145903-119146019Exon10: 77 residues, 119146336-119146563Exon11: 32 residues, 119187802-119187892Exon12: 2 residues, -Jump to PAXI_HUMAN  
Tune and view alternative isoforms
Loci Cluster (Details)Loci: 4079 119017288-119038982 ~-22K 9812(RAB35)(-)Loci: 4080 119132639-119187892 ~-55K 9820(PXN)(-)Loci: 2793 119360286-119362912 ~-3K 9830(COX6A1)(+)Loci: 4081 119383853-119391941 ~-8K 9835(SFRS9)(-)Loci: 2794 119392042-119420680 ~-29K 9836(DNCL1)(+)Loci: 2795 119572753-119589508 ~-17K 9842(CABP1)(+)Loci: 4078 118607977-118799478 ~-192K 9809(CIT)(-)Link out to UCSC