SynDB Home Page
SynDB Home Page
Browse
Search
Download
Help
People
links

blue bulletSynDB protein details  


Parse error: syntax error, unexpected T_VARIABLE in /home/kongl/syndb/www/sdb_nats.php on line 52
0GEMI2_HUMAN*   SwissProt (?) | Description Local Annotation Link Reference
General Information
NameSIP1
DescriptionSurvival of motor neuron protein-interacting protein 1 (smn- interacting protein 1) (component of gems 2) (gemin-2).
SpeciesHomo sapiens (NCBI taxonomy ID: 9606)
GO0005737 cytoplasm (TAS)
0005681 spliceosome complex (TAS)
0005515 protein binding (IPI)
0031202 RNA splicing factor activity, transesterifi... (TAS)
0006397 mRNA processing (TAS)
0008380 RNA splicing (TAS)
0000245 spliceosome assembly (TAS)

Warning: fopen(/home/kongl/syndb/www/temp/385118.dot) [function.fopen]: failed to open stream: Permission denied in /home/kongl/syndb/www/sdb_pro.php on line 269

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 270

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 271

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 272

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 273

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 274

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 299

Warning: fclose(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 300
schematic display of those terms with internal associations, click the node and browse the corresponding GO term
Domain Architecture (Details)
InterPro domains unassigned to SynO:
Survival motor neuron (SMN) interacting protein 1.IP1.nteracts with SMN protein and plays a crucial role in the biogenesis of spliceosomes. There is an evidence that the protein is linked to spinal muscular atrophy and amyotrophic lateral sclerosis in humans .
  IPR007022:Survival motor neuron interacting protein 1
IPR007022:SIP1 
Evalue:-174.744720458984 
Location:28-274
SequencesProtein: GEMI2_HUMAN (280 aa)
mRNA: NM_003616
Local Annotation
Synapse Ontology
introduce the substructure of the synapse and the location where the molecule can be seen. It will contain all the constructive special organelle and molecule we known.
sdb:0001 Structure/Biochemistry of synapse  (Evidence:keywords)
KO assignmentNot mapped to KEGG
Loci Structure (Details)Loci index, Chromosomal location, Length, Possible relational loci clusterExon1: 65 residues, 38653238-38653430Exon2: 30 residues, 38653783-38653868Exon3: 32 residues, 38656953-38657043Exon4: 22 residues, 38657494-38657554Exon5: 40 residues, 38661384-38661498Exon6: 17 residues, 38663946-38663991Exon7: 25 residues, 38667234-38667303Exon8: 39 residues, 38670912-38671023Exon9: 21 residues, 38672615-38672674Exon10: 179 residues, 38675394-38675926Exon11: 2 residues, -Jump to GEMI2_HUMAN  
Tune and view alternative isoforms
Loci Cluster (Details)Loci: 2833 38714150-38721178 ~-7K 11066(PNN)(+)Loci: 2832 38653238-38675926 ~-23K 11060(SIP1)(+)Link out to UCSC