SynDB Home Page
SynDB Home Page
Browse
Search
Download
Help
People
links

blue bulletSynDB protein details  


Parse error: syntax error, unexpected T_VARIABLE in /home/kongl/syndb/www/sdb_nats.php on line 52
0DEDD2_HUMAN*   SwissProt (?) | Description Local Annotation Link Reference
General Information
NameDEDD2
DescriptionDna-binding death effector domain-containing protein 2 (ded-containing protein flame-3).
SpeciesHomo sapiens (NCBI taxonomy ID: 9606)
GO0005730 nucleolus (IDA)
0005515 protein binding (IPI)
0030159 receptor signaling complex scaffold activity (NAS)
0008633 activation of pro-apoptotic gene products (NAS)
0030262 apoptotic nuclear changes (IDA)
0019725 cell homeostasis (NAS)
0008625 induction of apoptosis via death domain rec... (IMP)
0007242 intracellular signaling cascade (NAS)
0016481 negative regulation of transcription (NAS)
0006396 RNA processing (NAS)
0016075 rRNA catabolism (NAS)

Warning: fopen(/home/kongl/syndb/www/temp/948411050.dot) [function.fopen]: failed to open stream: Permission denied in /home/kongl/syndb/www/sdb_pro.php on line 269

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 270

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 271

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 272

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 273

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 274

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 299

Warning: fclose(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 300
schematic display of those terms with internal associations, click the node and browse the corresponding GO term
Domain Architecture (Details)
InterPro domains unassigned to SynO:
The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD.ee ) and the caspase recruitment domain (CARD.ee ).hich work in similar pathways and show similar interaction properties . The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation.r in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8.10).eath domains (in FADD).uclear localisation sequences (in DEDD).ransmembrane domains (in Bap31 and Bar).ucleotide-binding domains (in Dap3).oiled-coil domains (in Hip and Hippi).AM domains (in Bar).nd E2-binding RING domains (in Bar) .Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases ().uch as caspases 8 and 10 in humans.oth of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis.hich can either enhance or inhibit caspase activation .
  IPR001875:Death effector
The death domain (DD) is a conserved region of about 80 residues found on death receptors.nd which is required for death signalling.s well as a variety of non-apoptotic functions . Proteins containing this domain include the low affinity neurotrophin receptor p73.as.ADD (Fas-associated death domain protein).NF-1 (tumour necrosis factor receptor-1).elle protein kinase.nd the Tube adaptor protein .The induction of apoptosis also relies on the presence of a second domain.alled the death effector domain. The death effector domain (DED) occurs in proteins that regulate programmed cell death.ncluding both pro- and anti-apoptotic proteins; many of these proteins are also involved in controlling cellular activation and proliferation pathways . Proteins containing this domain include FADD (DED N-terminal.D C-terminal).EA-15 (phosphoproteins enriched in astrocytes 15kDa).aspases and FLIP.The induction of apoptosis results in the activation of caspases. family of aspartyl-specific cysteine proteases that are the main executioners of apoptosis. For example.he DED of FADD recruits two DED-containing caspases.aspase-8 and caspase-10.o form the death-inducing signal complex.hich initiates apoptosis. Proteins containing the caspase recruitment domain (CARD) are involved in the recruitment and activation of caspases during apoptosis . Other CARD proteins participate in NF-kappaB signalling pathways associated with innate or adaptive immune responses. Proteins containing CARD include Raidd.PAF-1 (apoptotic protease activating factor 1).rocaspase 9 and iceberg (inhibitor of interleukin-1-beta generation).The DD shows strong structural similarity to both DED and CARD. They all display a 6-helical closed bundle fold.ith greek key topology and an internal psuedo two-fold symmetry. However.espite their overall similarity in topology.ach domain forms specialised interactions.ypically only with members of its own subfamily.or example DED with DED.Please be aware that some of the proteins hit by the SSF signature may be false positives.
  IPR011029:DEATH-like
IPR001875:DED 
Evalue:-24.7958793640137 
Location:25-110
SequencesProtein: DEDD2_HUMAN (326 aa)
mRNA: NM_133328
Local Annotation
Synapse Ontology
intermediate filaments of the presynaptic compartments. Both microtubles and intermediate filaments represent the main structural scaffold of axons.
sdb:0086 intermediate filaments  (Evidence:keywords)
KO assignmentNot mapped to KEGG
Loci Structure (Details)Loci index, Chromosomal location, Length, Possible relational loci clusterExon1: 411 residues, 47394591-47395821Exon2: 49 residues, 47405691-47405832Exon3: 42 residues, 47411124-47411244Exon4: 124 residues, 47412671-47413037Exon5: 12 residues, 47413623-47413653Exon6: 2 residues, -Jump to DEDD2_HUMAN  
Tune and view alternative isoforms
Loci Cluster (Details)Loci: 4393 47162575-47190222 ~-28K 18940(ATP1A3)(-)Loci: 4394 47194312-47261797 ~-67K 18941(GRIK5)(-)Loci: 4395 47286962-47340851 ~-54K 18946(POU2F2)(-)Loci: 4396 47394591-47413653 ~-19K 18951(DEDD2)(-)Loci: 4392 47152677-47155311 ~-3K 18939(RABAC1)(-)Link out to UCSC