SynDB Home Page
SynDB Home Page
Browse
Search
Download
Help
People
links

blue bulletSynDB protein details  


Parse error: syntax error, unexpected T_VARIABLE in /home/kongl/syndb/www/sdb_nats.php on line 52
0ATPD_HUMAN*   SwissProt (?) | Description Local Annotation Link Reference
General Information
NameATP5D
DescriptionAtp synthase delta chain, mitochondrial precursor (ec 3.6.3.14).
SpeciesHomo sapiens (NCBI taxonomy ID: 9606)
GO0005753 proton-transporting ATP synthase complex (s... (TAS)
0005215 transporter activity (NAS)

Warning: fopen(/home/kongl/syndb/www/temp/1084798711.dot) [function.fopen]: failed to open stream: Permission denied in /home/kongl/syndb/www/sdb_pro.php on line 269

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 270

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 271

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 272

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 273

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 274

Warning: fwrite(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 299

Warning: fclose(): supplied argument is not a valid stream resource in /home/kongl/syndb/www/sdb_pro.php on line 300
schematic display of those terms with internal associations, click the node and browse the corresponding GO term
Domain Architecture (Details)
InterPro domains unassigned to SynO:
ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient.sing the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse.sing the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases.hich can differ in function (ATP synthesis and/or hydrolysis).tructure (F-.- and A-ATPases contain rotary motors) and in the type of ions they transport . F-ATPases (F1F0-ATPases) in mitochondria.hloroplasts and bacterial plasma membranes are the prime producers of ATP.sing the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts).V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles.atalysing ATP hydrolysis to transport solutes and lower pH in organelles.A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases.P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles.nd function to transport a variety of different ions across membranes.E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs.ncluding extracellular ATP.F-ATPases (also known as F1F0-ATPase.r H(+)-transporting two-sector ATPase) () are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha.eta.amma.elta.psilon).hile the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C).ine in mitochondria (A-G.6.8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex.he central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits.hile in the F0 complex.he ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions.ut the F0 rotor is usually stronger.sing the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient.This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) . In bacterial species.he delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP. in metazoans. More information about this protein can be found at Protein of the Month: ATP Synthases .
  IPR001469:ATPase, F1 complex, delta/epsilon subunit
IPR001469:ATP-synt_DE_N 
Evalue:-29.2441253662109 
Location:37-121IPR001469:ATP-synt_DE 
Evalue:-6.33724212646484 
Location:123-168
SequencesProtein: ATPD_HUMAN (168 aa)
mRNA: NM_001687
Local Annotation
Synapse Ontology
mitochondria are frequently observed in the vicinity of the synaptic vesicle clusters, in agreement with the ATP requirement of several steps of the vesicle cycle.
sdb:0118 mitochondria  (Evidence:keywords)
KO assignmentNot mapped to KEGG
Loci Structure (Details)Loci index, Chromosomal location, Length, Possible relational loci clusterExon1: 81 residues, 1192748-1192990Exon2: 53 residues, 1193454-1193608Exon3: 31 residues, 1195095-1195184Exon4: 172 residues, 1195313-1195823Exon5: 2 residues, -Jump to ATPD_HUMAN  
Tune and view alternative isoforms
Loci Cluster (Details)Loci: 4349 568224-584530 ~-16K 17494(POLRMT)(-)Loci: 3077 868357-872013 ~-4K 17519(GPR54)(+)Loci: 3078 951436-960723 ~-9K 17523(GRIN3B)(+)Loci: 3079 1192748-1195823 ~-3K 17537(ATP5D)(+)Loci: 3080 1334888-1346583 ~-12K 17550(+)Loci: 4350 1766247-1799450 ~-33K 17579(-)Loci: 4351 1988469-2002233 ~-14K 17594(MKNK2)(-)Loci: 4352 2051987-2102554 ~-51K 17601(AP3D1)(-)Loci: 3076 540892-568157 ~-27K 17493(HCN2)(+)Link out to UCSC